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Sawyer JK, Montague RA, Klemm JW, Goddard O, Chakraborty A, Belato PB, Fox DT. Loofah suppresses cell death in long-lived Drosophila hindgut enterocytes. Development. 2025 Dec 15;152(24). doi: 10.1242/dev.204835. Epub 2025 Dec 18. PubMed PMID: 41410003; PubMed Central PMCID: PMC12834205.
Russell NJ, Belato PB, Oliver LS, Chakraborty A, Roeder AHK, Fox DT, Formosa-Jordan P. Spatial ploidy inference using quantitative imaging.Cell Rep Methods. 2025 Dec 15;5(12):101249. doi: 10.1016/j.crmeth.2025.101249. Epub 2025 Dec 4. PubMed PMID: 41349530; PubMed Central PMCID: PMC12859483.
Blackmer JE, Jezuit EA, Chakraborty A, Yalamanchi SN, Montague RA, Dickert EE, Peterson NG, Outlaw W, Fox DT. Synaptic vesicle glycoprotein 2 enables viable aneuploidy following centrosome amplification. Genetics. 2025 Oct 8;231(2). doi:10.1093/genetics/iyaf148. PubMed PMID: 40744629; PubMed Central PMCID: PMC12505302.
Chakraborty A, DeLuca S, Gangasani M, Rogers S, Bursac N, Fox DT. Organ-specific rewiring of mitochondrial integrity through COX7A dictates cellular ploidy control. bioRxiv. 2025 Sep 30;. doi: 10.1101/2025.09.29.678879. PubMed PMID: 41256659; PubMed Central PMCID: PMC12621818.
Zhou KC, Cook C, Chakraborty A, Bagwell J, Jönsson J, Lee KC, Yang X, Xu S, Balla R, Kolar K, Lewis C, Harfouche M, Fox DT, Bagnat M, Horstmeyer R. High-speed 4D fluorescence light field tomography of whole freely moving organisms. Optica. 2025 May 20;12(5):674-684. doi: 10.1364/optica.549707. Epub 2025 May 5. PubMed PMID: 40727716; PubMed Central PMCID: PMC12302686.
Chakraborty A, Peterson NG, King JS, Gross RT, Pla MM, Thennavan A, Zhou KC, DeLuca S, Bursac N, Bowles DE, Wolf MJ, Fox DT. Conserved chamber-specific polyploidy maintains heart function in Drosophila. Development. 2023 Aug 15;150(16). doi: 10.1242/dev.201896. Epub 2023 Aug 22. PubMed PMID: 37526609; PubMed Central PMCID: PMC10482010.

Profile in: Morairti, A (2023). The importance of being in the right place, with the right ploidy, at the right time- and how not to mend broken hearts. Prelights doi: 10.1242/prelights.33981.
Profile in: Research Highlight (2023): Chamber-specific cardiomyocyte ploidy levels regulate heart development. Development doi: 15 August 2023; 150 (16): e150_e1602.
Profile in: Pennisi, E. (2023). How bulked-up cells shape hearts and leaves. Science doi: 10.1126/science. adk4435

Wang PY, Chakraborty A, Ma HJ, Wu JW, Jang AC, Lin WC, Pi HW, Yeh CT, Cheng ML, Yu JS, Pai LM. Drosophila CTP synthase regulates collective cell migration by controlling the polarized endocytic cycle. Development. 2022 Aug 15;149(16). doi: 10.1242/dev.200190. Epub 2022 Aug 22. PubMed PMID: 35899600.
Chakraborty A, Lin WC, Lin YT, Huang KJ, Wang PY, Chang IY, Wang HI, Ma KT, Wang CY, Huang XR, Lee YH, Chen BC, Hsieh YJ, Chien KY, Lin TY, Liu JL, Sung LY, Yu JS, Chang YS, Pai LM. SNAP29 mediates the assembly of histidine-induced CTP synthase filaments in proximity to the cytokeratin network. J Cell Sci. 2020 May 11;133(9). doi: 10.1242/jcs.240200. PubMed PMID: 32184263.
Lin WC, Chakraborty A, Huang SC, Wang PY, Hsieh YJ, Chien KY, Lee YH, Chang CC, Tang HY, Lin YT, Tung CS, Luo JD, Chen TW, Lin TY, Cheng ML, Chen YT, Yeh CT, Liu JL, Sung LY, Shiao MS, Yu JS, Chang YS, Pai LM. Histidine-Dependent Protein Methylation Is Required for Compartmentalization of CTP Synthase. Cell Rep. 2018 Sep 4;24(10):2733-2745.e7. doi: 10.1016/j.celrep.2018.08.007. PubMed PMID: 30184506.
Pai LM, Wang PY, Lin WC, Chakraborty A, Yeh CT, Lin YH. Ubiquitination and filamentous structure of cytidine triphosphate synthase. Fly (Austin). 2016 Jul 2;10(3):108-14. doi: 10.1080/19336934.2016.1182268. Epub 2016 Apr 26. PubMed PMID: 27116391; PubMed Central PMCID: PMC4970526.
Wang PY, Lin WC, Tsai YC, Cheng ML, Lin YH, Tseng SH, Chakraborty A, Pai LM. Regulation of CTP Synthase Filament Formation During DNA Endoreplication in Drosophila. Genetics. 2015 Dec;201(4):1511-23. doi: 10.1534/genetics.115.180737. Epub 2015 Oct 19. PubMed PMID: 26482795; PubMed Central PMCID: PMC4676535.